软件资料:
软件名称:StereoPlex
软件类别:SYBYL-X
录入时间:2010-07-19 15:44:43


软件简介:
Expand the Stereochemical Diversity of a Database


详细介绍:

简介:

Most compound collections (corporate databases, screening libraries, compound-provider catalogs) are comprised of 2D structures with incomplete and/or incorrect indications of stereochemistry. This inevitably leads to arbitrary and/or incorrect stereochemistry when these structures are converted to 3D. Although a compound may be registered with complete stereochemistry, often the "wrong" stereoisomer of an active compound is used in a virtual HTS application such as docking, 3D-searching, or 3D-QSAR. This may result in a missed hit of potentially immense importance. StereoPlex® addresses this issue.

StereoPlex generates multiple stereoisomers of each input structure according to a user-specified limit on the number of stereoisomers and a user-specified priority rule which tells the program which stereoisomers to generate if the complete set would exceed the user's limit. Subject to the user-specified priority rule, StereoPlex "multiplexes" both atom-centered (R/S) and bond-centered (E/Z) chirality. StereoPlex does not simply output all allowed permutations of chiral specifications, but rather employs a novel and unique algorithm to exclude topologically impossible stereoisomers.

说明下载:

StereoPlex Brochure (456k)

Key Benefits

  • Enables user-controlled "multiplexing" of stereocenters to avoid missing "hits" in docking, 3D-search, etc. due to using the incorrect stereoisomer for the given target
  • Addresses both atom-centered (R/S) and bond-centered (E/Z) chirality
  • User specifies maximum number of stereoisomers to output per compound
  • User specifies priority rule for determining which stereocenters to address if maximum would be exceeded
  • Automatically eliminates topologically impossible stereoisomers of ring-systems
  • Supports input and output in SMILES and SD file format
  • Easily incorporated into other programs, shell scripts, and "pipelined" protocols


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